Viser treff 221-240 av 581

    • 1H, 13C, 15N resonance assignment of the apo form of the small, chitin-active lytic polysaccharide monooxygenase JdLPMO10A from Jonesia denitrificans 

      Christensen, Idd Andrea; Eijsink, Vincent; Aachmann, Finn Lillelund; Courtade, Gaston (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-19)
      The lytic polysaccharide monooxygenase <i>Jd</i>LPMO10A is the N-terminal domain of the multimodular protein Jd1381. The isolated <i>Jd</i>LPMO10A domain is one of the smallest chitin-active lytic polysaccharide monooxygenases known to date with a size of only 15.5 kDa. <i>Jd</i>LPMO10A is a copper-dependent oxidative enzyme that depolymerizes chitin by hydroxylating the C1 carbon in the glycosidic ...
    • nsroot: Minimalist process isolation tool implemented with Linux namespaces 

      Raknes, Inge Alexander; Fjukstad, Bjørn; Bongo, Lars Ailo Aslaksen (Journal article; Tidsskriftartikkel, 2017-11-26)
      Data analyses in the life sciences are moving from tools run on a personal computer to services run on large computing platforms. This creates a need to package tools and dependencies for easy installation, configuration and deployment on distributed platforms. In addition, for secure execution there is a need for process isolation on a shared platform. Existing virtual machine and container ...
    • Synthesis and molecular structure of perhalogenated rhenium-oxo corroles 

      Alemayehu, Abraham B.; Einrem, Rune F.; McCormick‑McPherson, Laura J.; Settineri, Nicholas S.; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-12)
      As part of our efforts to develop rhenium-oxo corroles as photosensitizers for oxygen sensing and photodynamic therapy, we investigated the potential <i>β</i>-perhalogenation of five ReO <i>meso</i>-tris(<i>para</i>-X-phenyl)corroles, Re[T<i>p</i>XPC](O) (X = CF<sub>3</sub>, H, F, CH<sub>3</sub>, and OCH<sub>3</sub>), with elemental chlorine and bromine. With Cl<sub>2</sub>, <i>β</i>-octachlorinated ...
    • Iridium corroles exhibit weak near-infrared phosphorescence but efficiently sensitize singlet oxygen formation 

      Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-05)
      Six-coordinate iridium(III) triarylcorrole derivatives, Ir[T<i>p</i>XPC)]L<sub>2</sub>, where T<i>p</i>XPC = tris(para-X-phenyl)corrole (X = CF<sub>3</sub>, H, Me, and OCH<sub>3</sub>) and L = pyridine (py), trimethylamine (tma), isoquinoline (isoq), 4-dimethylaminopyridine (dmap), and 4-picolinic acid (4pa), have been examined, with a view to identifying axial ligands most conducive to near-infrared ...
    • Description of the uEMEP_v5 downscaling approach for the EMEP MSC-W chemistry transport model 

      Denby, Bruce; Gauss, Michael; Wind, Peter; Mu, Qing; Wærsted, Eivind Grøtting; Fagerli, Hilde; Valdebenito Bustamante, Alvaro Moises; Klein, Heiko (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-12-11)
      A description of the new air quality downscaling model – the urban EMEP (uEMEP) and its combination with the EMEP MSC-W model (European Monitoring and Evaluation Programme Meteorological Synthesising Centre West) – is presented. uEMEP is based on well-known Gaussian modelling principles. The uniqueness of the system is in its combination with the EMEP MSC-W model and the “local fraction” calculation ...
    • Unequivocal structure confirmation of a breitfussin analog by anisotropic NMR measurements 

      Ndukwe, Ikenna E.; Lam, Yu-hong; Pandey, Sunil Kumar; Haug, Bengt Erik; Bayer, Annette; Sherer, Edward C.; Blinov, Kirill A.; Williamson, R. Thomas; Isaksson, Johan; Reibarkh, Mikhail; Liu, Yizhou; Martin, Gary E. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-09-21)
      Structural features of proton-deficient heteroaromatic natural products, such as the breitfussins, can severely complicate their characterization by NMR spectroscopy. For the breitfussins in particular, the constitution of the five-membered oxazole central ring cannot be unequivocally established via conventional NMR methods when the 4′-position is halogenated. The level of difficulty is exacerbated ...
    • X-ray crystal structure of Vibrio alkaline phosphatase with the non-competitive inhibitor cyclohexylamine 

      Ásgeirsson, Bjarni; Markússon, Sigurbjörn; Hlynsdóttir, Sigríður S.; Helland, Ronny; Hjörleifsson, Jens G. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-10-15)
      <i>Background</i> - <i>Para</i>-nitrophenyl phosphate, the common substrate for alkaline phosphatase (AP), is available as a cyclohexylamine salt. Here, we report that cyclohexylamine is a non-competitive inhibitor of APs.<br><br> <i>Methods</i> - Cyclohexylamine inhibited four different APs. Co-crystallization with the cold-active <i>Vibrio</i> AP (VAP) was performed and the structure solved.<br><br> ...
    • Structural insight into DNA joining: from conserved mechanisms to diverse scaffolds 

      Williamson, Adele Kim; Leiros, Hanna-Kirsti S. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-04)
      DNA ligases are diverse enzymes with essential functions in replication and repair of DNA; here we review recent advances in their structure and distribution and discuss how this contributes to understanding their biological roles and technological potential. Recent high-resolution crystal structures of DNA ligases from different organisms, including DNA-bound states and reaction intermediates, have ...
    • A scalable and green one-minute synthesis of substituted phenols 

      Elumalai, Vijayaragavan; Hansen, Jørn H (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-07)
      A mild, green and highly efficient protocol was developed for the synthesis of substituted phenols via <i>ipso</i>-hydroxylation of arylboronic acids in ethanol. The method utilizes the combination of aqueous hydrogen peroxide as the oxidant and H<sub>2</sub>O<sub>2</sub>/HBr as the reagent under unprecedentedly simple and convenient conditions. A wide range of arylboronic acids were smoothly ...
    • Methanotroph populations and CH 4 oxidation potentials in High Arctic peat are altered by herbivory induced vegetation change 

      Rainer, Edda Marie; Seppey, Victor William Christophe; Tveit, Alexander Tøsdal; Svenning, Mette Marianne (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-07-08)
      Methane oxidizing bacteria (methanotrophs) within the genus <i>Methylobacter</i> constitute the biological filter for methane (CH<sub>4</sub>) in many Arctic soils. Multiple <i>Methylobacter</i> strains have been identified in these environments but we seldom know the ecological significance of the different strains. High-Arctic peatlands in Svalbard are heavily influenced by herbivory, leading to ...
    • First-Principles Calculation of 1H NMR Chemical Shifts of Complex Metal Polyhydrides: The Essential Inclusion of Relativity and Dynamics 

      Castro, Abril C; Balcells, David; Repisky, Michal; Helgaker, Trygve; Cascella, Michele (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-23)
      <sup>1</sup>H NMR spectroscopy has become an important technique for the characterization of transition-metal hydride complexes, whose metal-bound hydrides are often difficult to locate by X-ray diffraction. In this regard, the accurate prediction of <sup>1</sup>H NMR chemical shifts provides a useful, but challenging, strategy to help in the interpretation of the experimental spectra. In this work, ...
    • Novel Synthesis of Lipoxine A4 Analogues. Towards Allostric Modulators for Human Cannabinoid Receptor Type 1 

      Ismael, Aya (Master thesis; Mastergradsoppgave, 2015-11-15)
      The synthesis of the benzoid-based lipoxine A4 (LXA4) is the focus of this study specifically, the para substituted benzoid system. LXA4 is an endogenous agonist binding with high affinity to (ALXR) receptor that initiate it to display anti-inflammatory and antioxidant activities. Arachidonic acid is the cascade of LXA4 and its derivatives. These compounds belong to the biological active eicosanoids, ...
    • Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae 

      Mazurkewich, Scott; Helland, Ronny; Mackenzie, Alasdair; Eijsink, Vincent; Pope, Phillip Byron; Brändén, Gisela; Larsbrink, Johan (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-13)
      Chitin is one of the most abundant renewable organic materials found on earth. The chitin utilization locus in <i>Flavobacterium johnsoniae</i>, which encodes necessary proteins for complete enzymatic depolymerization of crystalline chitin, has recently been characterized but no detailed structural information on the enzymes was provided. Here we present protein structures of the <i>F. johnsoniae</i> ...
    • Centre for Digital Life Norway - Annual report 2017 

      Ukjent forfatter (Research report; Forskningsrapport, 2018)
      Centre for Digital Life Norway (DLN) is a virtual centre, institutionally anchored at NTNU, UiO and UiB. It is funded by the Research Council of Norway under the Digital Life (DL) initiative and receives in kind support from the host universities. The centre is built around the 12 research projects are currently funded through the research council’s Digital Life initiative. DLNs mission is ...
    • Computational Studies of Selected Mutants of Shrimp Alkaline Phosphatase 

      Burkow, Magnus (Master thesis; Mastergradsoppgave, 2020-06-01)
      Drug discovery and refinement for use in the industry is an important and lucrative field within chemistry. In this regard, computational chemistry has shown to be a valuable tool in assisting drug discovery. A set of intriguing proteins used in drug discovery are cold-adapted enzymes. These enzymes have a lower activation point which makes them of interest in industrial use. In this study, the ...
    • Total Synthesis of Phorbazole B 

      Guttormsen, Yngve; Fairhurst, Magnus John Espeland; Pandey, Sunil Kumar; Isaksson, Johan; Haug, Bengt Erik; Bayer, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-10-21)
      Phorbazoles are polychlorinated heterocyclic secondary metabolites isolated from a marine sponge and several of these natural products have shown inhibitory activity against cancer cells. In this work, a synthesis of the trichlorinated phorbazole B using late stage electrophilic chlorination was developed. The synthesis relied on the use of an oxazole precursor, which was protected with an iodine ...
    • Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement 

      Sonnenberg, Cecilie Bækkedal; Kahlke, Tim; Haugen, Peik (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-10-06)
      <i>Background</i> - The genome of <i>Vibrionaceae</i> bacteria, which consists of two circular chromosomes, is replicated in a highly ordered fashion. In fast-growing bacteria, multifork replication results in higher gene copy numbers and increased expression of genes located close to the origin of replication of Chr 1 (<i>ori1</i>). This is believed to be a growth optimization strategy to satisfy ...
    • The Arabidopsis (ASHH2) CW domain binds monomethylated K4 of the histone H3 tail through conformational selection 

      Dobrovolska, Olena; Brilkov, Maxim; Madeleine, Noëlly; Ødegaard-Fougner, Øyvind; Strømland, Øyvind; Martin, Stephen R.; De Marco, Valeria; Christodoulou, Evangelos; Teigen, Knut; Isaksson, Johan; Underhaug, Jarl; Reuter, Nathalie; Aalen, Reidunn B.; Aasland, Rein; Halskau, Øyvind (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-02-21)
      Chromatin post‐translational modifications are thought to be important for epigenetic effects on gene expression. Methylation of histone N‐terminal tail lysine residues constitutes one of many such modifications, executed by families of histone lysine methyltransferase (HKMTase). One such protein is ASHH2 from the flowering plant <i>Arabidopsis thaliana</i>, equipped with the interaction domain, CW, ...
    • Iridium Corroles Exhibit Weak Near-Infrared Phosphorescence but Efficiently Sensitize Singlet Oxygen Formation 

      Thomassen, Ivar Kristian; Mccormick-Mcpherson, Laura J; Borisov, Sergey M.; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-05)
      Six-coordinate iridium(III) triarylcorrole derivatives, Ir[T<i>p</i>XPC)]L<sub>2</sub>, where T<i>p</i>XPC = tris(<i>para</i>-X-phenyl)corrole (X = CF<sub>3</sub>, H, Me, and OCH<sub>3</sub>) and L = pyridine (py), trimethylamine (tma), isoquinoline (isoq), 4-dimethylaminopyridine (dmap), and 4-picolinic acid (4pa), have been examined, with a view to identifying axial ligands most conducive to ...
    • Protonation-Induced Hyperporphyrin Spectra of meso-Aminophenylcorroles 

      Thomassen, Ivar Kristian; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-04-06)
      UV–vis spectrophotometric titrations have been carried out on <i>meso-</i>tris(<i>o/m/p</i>-aminophenyl)corrole (H<sub>3</sub>[<i>o/m/p</i>-TAPC]) and <i>meso-</i>triphenylcorrole (H<sub>3</sub>[TPC]) in dimethyl sulfoxide with methanesulfonic acid (MSA). Monoprotonation was found to result in hyperporphyrin spectra characterized by new, red-shifted, and intense Q bands. The effect was particularly ...