Viser treff 261-280 av 581

    • Computational Investigation on the Photophysical Properties of Halogenated Tetraphenyl BODIPY 

      Pomogaev, Vladimir; Chiodo, Sandro; Ruud, Kenneth; Kuznetsova, Rimma; Avramov, Pavel V (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-07)
      The electronic structure, transition probabilities, and corresponding quantum yields of fluorescence in a family of dihalogen-tetraphenyl-aza-BODIPY were calculated at the Time-Dependent Density Functional and post-Hartree–Fock levels of theory. Excellent agreement between theoretical and experimental spectral-luminescent data was achieved with the HSE06 functional and the 6-311G* basis set. Because ...
    • Carbonylative Suzuki-Miyaura couplings of sterically hindered aryl halides: Synthesis of 2-aroylbenzoate derivatives 

      Ismael, Aya; Skrydstrup, Troels; Bayer, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-02-10)
      We have developed a carbonylative approach to the synthesis of diversely substituted 2-aroylbenzoate esters featuring a new protocol for the carbonylative coupling of aryl bromides with boronic acids and a new strategy to favour carbonylative over non-carbonylative reactions. Two different synthetic pathways – (i) the alkoxycarbonylation of 2-bromo benzophenones and (ii) the carbonylative Suzuki–Miyaura ...
    • Computer Simulations of Antimicrobial Tripeptides with Proteolytic Stability Towards Chymotrypsin 

      Barge, Bente Sirin (Master thesis; Mastergradsoppgave, 2019-12-05)
      The emerging crisis of antimicrobial resistance calls for the development of new therapeutic drugs. Antimicrobial peptides (AMPs), found in a variety of species as part of the host-defence mechanisms, serves as promising candidates for clinical use. Studies of well-known AMPs like lactoferrin have lead to the preparation of short cationic AMPs (CAPs) with broad spectrum antimicrobial activity against ...
    • How To Make Your Computational Paper Interesting and Have It Published 

      Hopmann, Kathrin Helen (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-02-11)
      In 1987, the late German chemist Peter Hofmann of the University of Heidelberg wrote: “We still have a long way to go until a computation will be able to compete with or to substitute a lab experiment... one could then conclude that theoretical work in this field—not being quantitatively reliable anyhow—is rather useless, except for the purpose of keeping theorists busy.” However, Hofmann continued: ...
    • Main-Group-Element Isophlorin Complexes Revisited: The Question of a Subvalent Central Atom 

      Conradie, Jeanet; Brothers, Penelope Jane; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-03-15)
      A careful density functional theory reexamination of the geometric and electronic structures of reduced main-group porphyrin complexes E(Por)L2 (E = Si or Ge; L = pyridine or tetrahydrofuran), B2(Por), and C2(Por) has confirmed these as pure isophlorin derivatives with normal-valent coordinated central atoms. Only axially unligated Ge(Por) and the dications [B2(Por)]2+ and [C2(Por)]2+ feature aromatic ...
    • Relativistic Effects on a Metal-Metal Bond: Osmium Corrole Dimers 

      Alemayehu, Abraham; McCormick, Laura J; Vazquez Lima, Hugo; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-02-07)
      A series of metal–metal bonded osmium corrole dimers, {Os[TpXPC]}2, were synthesized in reasonably good yields (35–46%) via the interaction of the corresponding free-base meso-tris(p-X-phenyl)corroles (H3[TpXPC], X = CF3, H, CH3, and OCH3), Os3(CO)12, and potassium carbonate in 1,2,4-trichlorobenzene under an inert atmosphere at 180 °C over several hours. The complexes are only the second class of ...
    • Sulfoxonium Ylide Derived Metal Carbenoids in Organic Synthesis 

      Vaitla, Janakiram; Bayer, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-12)
      As pioneered by Corey and Chaykovsky, sulfoxonium ylides have had widespread application in organic synthesis for more than a half century. In most of the reactions, sulfoxonium ylides were used to react with electrophiles. Under suitable reaction conditions these ylides can generate metal carbenoids and react with nucleophiles. By combining the typical reactivity of sulfoxonium ylides with ...
    • To Bind or Not to Bind: Mechanistic Insights into C–CO2 Bond Formation with Late Transition Metals 

      García-López, Diego; Pavlovic, Ljiljana; Hopmann, Kathrin Helen (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-04-03)
      In transition metal-mediated carboxylation reactions, CO<sub>2</sub> inserts into a metal–nucleophile bond. At the carboxylation transition state (TS), CO<sub>2</sub> may interact with the metal (<i>inner</i>-sphere path) or may insert without being activated by the metal (<i>outer</i>-sphere path). Currently, there is no consensus as to which path prevails. In order to establish general predictions ...
    • Stereochemistry of Transition-Metal Dinitrosyl Complexes. A Molecular Orbital Rationale for the Attracto and Repulso Conformations 

      Ghosh, Abhik; Conradie, Jeanet (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-25)
      Transition-metal dinitrosyl complexes constitute a fairly large class of compounds, exemplified by some 500 structures in the Cambridge Structural Database. While many of the complexes exhibit a claw-like cis-attracto conformation, a handful of them exhibit a peculiar repulso conformation, in which the two NO groups are splayed outward and away from each other. Surprisingly, no computational study ...
    • X-ray Absorption Spectroscopy as a Probe of Ligand Noninnocence in Metallocorroles: The Case of Copper Corroles 

      Lim, Hyeongtaek; Kolle, Ekaney Thomas; Hedman, Britt; Hodgson, Keith O; Ghosh, Abhik; Solomon, Edward I. (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-05-02)
      The question of ligand noninnocence in Cu corroles has long been a topic of discussion. Presented herein is a Cu K-edge X-ray absorption spectroscopy (XAS) study, which provides a direct probe of the metal oxidation state, of three Cu corroles, Cu[TPC], Cu[Br8TPC], and Cu[(CF3)8TPC] (TPC = meso-triphenylcorrole), and the analogous Cu(II) porphyrins, Cu[TPP], Cu[Br8TPP], and Cu[(CF3)8TPP] (TPP = ...
    • Temperature adaptation of DNA ligases from psychrophilic organisms 

      Berg, Kristel; Leiros, Ingar; Williamson, Adele Kim (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-03-02)
      DNA ligases operating at low temperatures have potential advantages for use in biotechnological applications. For this reason, we have characterized the temperature optima and thermal stabilities of three minimal Lig E-type ATP-dependent DNA ligase originating from Gram-negative obligate psychrophilic bacteria. The three ligases, denoted Vib-Lig, Psy-Lig, and Par-Lig, show a remarkable range of ...
    • QresFEP: An Automated Protocol for Free Energy Calculations of Protein Mutations in Q 

      Jespers, Willem; Isaksen, Geir Villy; Andberg, Tor Arne Heim; Vasile, Silvana; van Veen, Amber; Åqvist, Johan; Brandsdal, Bjørn Olav; Gutiérrez-de-Terán, Hugo (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-08-22)
      Predicting the effect of single-point mutations on protein stability or protein−ligand binding is a major challenge in computational biology. Free energy calculations constitute the most rigorous approach to this problem, though the estimation of converged values for amino acid mutations remains challenging. To overcome this limitation, we developed tailored protocols to calculate free energy ...
    • Temporal dynamics of intra-and extra-cellular microcystins concentrations in Koka reservoir (Ethiopia): Implications for public health risk 

      Tilahun, Samson; Kifle, Demeke; Zewde, Tigist W; Johansen, Jostein a; Demissie, Taye Beyene; Hansen, Jørn H (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-06-20)
      This study was carried out with a view of understanding the temporal dynamics of microcystin concentrations in both algal seston and water samples and the associated public health risk. All the major MC variants, namely MC-LR, MC-YR, and MC-RR, were detected in both the algal seston and water samples. In the majority of the samples, the most potent variant, MC-LR, constituted the greatest proportion ...
    • Cost-Effective Potential for Accurate Polarizable Embedding Calculations in Protein Environments 

      Reinholdt, Peter; Kjellgren, Erik Rosendahl; Steinmann, Casper; Olsen, Jógvan Magnus Haugaard (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-12-19)
      The fragment-based polarizable embedding (PE) model combined with an appropriate electronic structure method constitutes a highly efficient and accurate multiscale approach for computing spectroscopic properties of a central moiety including effects from its molecular environment through an embedding potential. There is, however, a comparatively high computational overhead associated with the ...
    • Strong Duschinsky Mixing Induced Breakdown of Kasha's Rule in an Organic Phosphor 

      Paul, Lopa; Moitra, Torsha; Ruud, Kenneth; Chakrabarti, Swapan (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-01-08)
      We present the novel observation that Duschinsky mixings can lead to the breakdown of Kasha’s rule in a white light phosphor molecule, dibenzo[<i>b,d</i>]thiophen-2-yl (4-chlorophenyl)methanone. Our theoretical analyses show the energy gap between the T<sub>1</sub> and T<sub>2</sub> states (0.48 eV) is too large to allow for any significant population of the T<sub>2</sub> state at room temperature ...
    • Electron-Spin Structure and Metal-Ligand Bonding in Open-Shell Systems from Relativistic EPR and NMR: A Case Study of Square-Planar Iridium Catalysts 

      Bora, Pankaj L; Novotny, Jan; Ruud, Kenneth; Komorovsky, Stanislav; Marek, Radek (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-11-28)
      Electron and nuclear magnetic resonance spectroscopies are indispensable and powerful methods for investigating the molecular and electronic structures of open-shell systems. We demonstrate that the NMR and EPR parameters are extremely sensitive quantitative probes for the electronic spin density around heavy-metal atoms and the metal–ligand bonding. Using relativistic density-functional theory, we ...
    • Photo-transformation trajectories of Nitro-Spiropyran in Hybrid Compounds with [60]Fullerene 

      Pomogaev, Valdimir A; Avramov, Pavel V; Ruud, Kenneth (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-07-12)
      Photo- and thermo- isomerization trajectories of various conversion pathways between nitro-spiropyran and its <i>trans–trans–cis</i> merocyanine form were produced and the role of nπ* states was investigated along the corresponding potential energy surface calculated using the ωB97XD functional and the cc-pVDZ basis set. The nondissociative nπ* states on the photoisomerization trajectories can switch ...
    • Synthesis and biological evaluation of new dipicolylamine zinc chelators as metallo-β-lactamase inhibitors 

      Prandina, Anthony; Radix, Sylvie; Le Borgne, Marc; Jordheim, Lars Petter; Bousfiha, Zineb; Fröhlich, Christopher; Leiros, Hanna-Kirsti S.; Samuelsen, Ørjan; Frøvold, Espen; Rongved, Pål; Åstrand, Ove Alexander Høgmoen (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-02-02)
      Antibiotics are key drugs in modern healthcare, especially in hospitals, where multiresistant bacteria resides and is a potential threat to human health. In the present work, a new series of adjuvants working synergistically with the carbapenem meropenem, in which a selective zinc-chelating agent was covalently linked to the small bacterial peptide D-Ala-D-Ala, was synthesized and tested against ...
    • Four-component relativistic 31P NMR calculations for: Trans -platinum(ii) complexes: Importance of the solvent and dynamics in spectral simulations 

      Castro, Abril C.; Fliegl, Heike; Cascella, Michele; Helgaker, Trygve; Repisky, Michal; Komorovsky, Stanislav; Medrano, María Ángeles; Quiroga, Adoración G.; Swart, Marcel (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-03-18)
      We report a combined experimental-theoretical study on the 31P NMR chemical shift for a number of trans-platinum(II) complexes. Validity and reliability of the 31P NMR chemical shift calculations are examined by comparing with the experimental data. A successful computational protocol for the accurate prediction of the 31P NMR chemical shifts was established for trans-[PtCl2(dma)PPh3] (dma = ...
    • Azulicorrole 

      Larsen, Simon; Mccormick-Mcpherson, Laura J; Teat, Simon J.; Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-04-12)
      Acid-catalyzed condensation of pyrrole, 4-trifluoromethylbenzaldehyde, and azulene, followed by DDQ oxidation, has resulted in the isolation of the novel macrocycle azulicorrole, arguably the first example of a carbacorrole aside from N-confused corrole. Despite poor yields (<1%), the free ligand could be structurally characterized and converted to the formal Cu(III) and Au(III) derivatives, of which ...