A molecular-based identification resource for the arthropods of Finland
Permanent link
https://hdl.handle.net/10037/26349Date
2021-09-25Type
Journal articleTidsskriftartikkel
Peer reviewed
Author
Roslin, Tomas; Somervuo, Panu; Pentinsaari, Mikko; Hebert, Paul D. N.; Agda, Jireh; Ahlroth, Petri; Anttonen, Perttu; Aspi, Jouni; Blagoev, Gergin; Blanco, Santiago; Chan, Dean; Clayhills, Tom; deWaard, Jeremy; deWaard, Stephanie; Elliot, Tyler; Elo, Riikka; Haapala, Sami; Helve, Eero; Ilmonen, Jari; Hirvonen, Petri; Ho, Chris; Itämies, Juhani; Ivanov, Vladislav; Jakovlev, Jevgeni; Juslén, Aino; Jussila, Reijo; Kahanpää, Jere; Kaila, Lauri; Kaitila, Jari-Pekka; Kakko, Ari; Kakko, Iiro; Karhu, Ali; Karjalainen, Sami; Kjærandsen, Jostein; Koskinen, Janne; Laasonen, Erkki M.; Laasonen, Leena; Laine, Erkka; Lampila, Petri; Levesque-Beaudin, Valerie; Lu, Liuqiong; Lähteenaro, Meri; Majuri, Pekka; Malmberg, Sampsa; Manjunath, Ramya; Martikainen, Petri; Mattila, Jaakko; McKeown, Jaclyn; Metsälä, Petri; Miklasevskaja, Margarita; Miller, Meredith; Miskie, Renee; Muinonen, Arto; Mukkala, Veli-Matti; Naik, Suresh; Nikolova, Nadia; Nupponen, Kari; Ovaskainen, Otso; Österblad, Ika; Paasivirta, Lauri; Pajunen, Timo; Parkko, Petri; Paukkunen, Juho; Penttinen, Ritva; Perez, Kate; Pohjoismäki, Jaakko; Prosser, Sean; Raekunnas, Martti; Rahulan, Miduna; Rannisto, Meeri; Ratnasingham, Sujeevan; Raukko, Pekka; Rinne, Aki; Rintala, Teemu; Miranda Romo, Susana; Salmela, Jukka; Salokannel, Juha; Savolainen, Riitta; Schulman, Leif; Sihvonen, Pasi; Soliman, Dina; Sones, Jayme; Steinke, Claudia; Ståhls, Gunilla; Tabell, Jukka; Tiusanen, Mikko; Várkonyi, Gergely; Vesterinen, Eero J.; Viitanen, Esko; Vikberg, Veli; Viitasaari, Matti; Vilen, Jussi; Warne, Connor; Wei, Catherine; Winqvist, Kaj; Zakharov, Evgeny; Mutanen, MarkoAbstract
To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study,
we (1) report the creation of a comprehensive reference library of DNA barcodes for
the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod
species known from Finland, including 10,811 (45%) of 23,956 insect species. To
quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of
Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned
to a unique species when compared to the new reference library alone, 85% were
correctly identified when compared to BOLD with the new material included, and
75% with the new material excluded. To capitalize on this resource, we used the new
reference material to train a probabilistic taxonomic assignment tool, FinPROTAX,
scoring high success. For the full-length barcode region, the accuracy of taxonomic
assignments at the level of classes, orders, families, subfamilies, tribes, genera, and
species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively.
The FinBOL arthropod reference library and FinPROTAX are available through the
Finnish Biodiversity Information Facility (www.laji.fi) at https://laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the
taxonomic community of Finland to all sectors of society.
Publisher
WileyCitation
Roslin, Somervuo, Pentinsaari, Hebert, Agda, Ahlroth, Anttonen, Aspi, Blagoev, Blanco, Chan, Clayhills, deWaard, deWaard, Elliot, Elo, Haapala, Helve, Ilmonen, Hirvonen, Ho, Itämies, Ivanov, Jakovlev, Juslén, Jussila, Kahanpää, Kaila, Kaitila, Kakko, Kakko, Karhu, Karjalainen, Kjærandsen, Koskinen, Laasonen, Laasonen, Laine, Lampila, Levesque-Beaudin, Lu, Lähteenaro, Majuri, Malmberg, Manjunath, Martikainen, Mattila, McKeown, Metsälä, Miklasevskaja, Miller, Miskie, Muinonen, Mukkala, Naik, Nikolova, Nupponen, Ovaskainen, Österblad, Paasivirta, Pajunen, Parkko, Paukkunen, Penttinen, Perez, Pohjoismäki, Prosser, Raekunnas, Rahulan, Rannisto, Ratnasingham, Raukko, Rinne, Rintala, Miranda Romo, Salmela, Salokannel, Savolainen, Schulman, Sihvonen, Soliman, Sones, Steinke, Ståhls, Tabell, Tiusanen, Várkonyi, Vesterinen, Viitanen, Vikberg, Viitasaari, Vilen, Warne, Wei, Winqvist, Zakharov, Mutanen. A molecular-based identification resource for the arthropods of Finland. Molecular Ecology Resources. 2022;22(2):803-822Metadata
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