• Nær-orthogonale eksperimenter i organiske syntesereaksjoner 

      Simonsen, Geir (Master thesis; Mastergradsoppgave, 2010-04)
      I avhandlingen prøver jeg å vise hvordan nær-othhogonale eksperimenter kan brukes i screeningforsøk
    • The preparation of N-methyliminodiacetic acid protected alkynyl boronates 

      O'Donnell, Michael (Master thesis; Mastergradsoppgave, 2010-06)
      The purpose of this work is to document the attempted syntheses of N-methyliminoacetic acid (MIDA) -protected alkynyl boronates according to procedures and methodologies that have been successfully employed in the syntheses of MIDA-protected alkyl, alkenyl, aryl and heteroaryl boronates. The rationale for the development of this class of MIDA-protected boronates is presented, both in terms of some ...
    • Flexible membrane active antimicrobial tripeptides with stability towards chymotryptic degradation 

      Isaksen, Geir Villy (Master thesis; Mastergradsoppgave, 2010-06-14)
      In recent years antimicrobial peptides have gained a lot of attention due to their potential as a new generation of antibiotics combating the growing problem of antibiotic resistance. It is believed that the amphipathic structure of cationic peptides is a key feature for antimicrobial activity, and that this enables them to interact with the bacterial cell membrane. The conformational space of a ...
    • Antibiotikaresistent - hva nå? 

      Leiros, Hanna-Kirsti S. (Conference object; Konferansebidrag, 2010-09-02)
    • Ab initio wavefunctions in bioinorganic chemistry : more than a succes d'estime? 

      Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      Dedicated to the memory of Björn Roos (1937–2010), one of the fathers of modern multiconfigurational quantum chemistry, who also cared deeply about chemical applications, and a fun and inspiring friend to countless theoretically oriented chemists.
    • Gauge-origin independent calculations of Jones birefringence 

      Shcherbin, Dmitri; Thorvaldsen, Andreas johan; Jonsson, Dan Johan; Ruud, Kenneth (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      We present the first gauge-origin independent formulation of Jones birefringence at the Hartree–Fock level of theory. Gauge-origin independence is achieved through the use of London atomic orbitals. The implementation is based on a recently proposed atomic orbital-based response theory formulation that allows for the use of both time- and perturbation-dependent basis sets [Thorvaldsen, Ruud, Kristensen, ...
    • Relativistic four-component calculations of Buckingham birefringence using London atomic orbitals 

      Bast, Radovan; Ruud, Kenneth; Rizzo, Antonio; Helgaker, Trygve (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      We present the first relativistic study of the electric-field-gradient induced birefringence (Buckingham birefringence), with application to the series of molecules CX2 (X = O, S, Se, Te). A recently developed atomic-orbital-driven scheme for the calculation of time-dependent molecular properties using one-, two- and four-component relativistic wave functions (Bast et al. in Chem Phys 356:177, 2009) ...
    • The optical activity of beta, gamma-enones in ground and excited states using circular dichroism and circularly polarized luminescence 

      Pecul, Magdalena; Ruud, Kenneth (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      The circularly polarized luminescence (CPL) and electronic circular dichroism (CD) spectroscopic parameters corresponding to the n ← π* and n → π* transitions, respectively, have been calculated for selected β,γ-enones using density functional theory. For the smallest β,γ-enone, (1R,4R)-bicyclo[2.2.1]hept-5-en-2-one (norbornenone), coupled-cluster calculations have also been carried out. The ...
    • Synthesis of 5-,6-, and 7-membered heterocycles from barbituric acid derivatives 

      Guyader, David (Master thesis; Mastergradsoppgave, 2011-06-10)
      SUMMARY A new procedure has been developed for the synthesis of barbituric acid derivatives. The reactions were performed under solvent free conditions without any catalyst. Employing this synthetic route, a large number of chalconoids and 5-,6-, and 7-membered heterocycles have been successfully synthesized in a very short time. The chalconoids have been synthesized from a barbituric derivative ...
    • Purification and characterization of a salt tolerant metallo-beta-lactamase from Aliivibrio salmonicida 

      Kristiansen, Anders (Master thesis; Mastergradsoppgave, 2011-07)
      Beta-lactamases are enzymes that inactivate beta-lactam antibiotics by hydrolyzing the amide bond that exists in the beta-lactam ring, disrupting the ring structure and make the antibiotics nonfunctional against bacteria. Metallo-beta-lactamases (MBLs) are a group of beta-lactamases which needs metal ions bound to its active site in order to function and are an important factor in many bacteria in ...
    • Synthesis of Potential Metallo-beta-Lactamase Inhibitors 

      Paulsen, Britt (Master thesis; Mastergradsoppgave, 2011-11-15)
    • Protein-protein binding affinities calculated using the LIE method 

      Andberg, Tor Arne Heim (Master thesis; Mastergradsoppgave, 2011-11-15)
      Absolute binding free energies for the third domain of the turkey ovomucoid inhibitor in complex with Streptomyces griseus proteinase B and porcine pancreatic elastase has been calculated using the linear interaction energy method.
    • Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation 

      Kahlke, Tim; Goesmann, Alexander; Hjerde, Erik; Willassen, Nils Peder; Haugen, Peik (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      The criteria for defining bacterial species and even the concept of bacterial species itself are under debate, and the discussion is apparently intensifying as more genome sequence data is becoming available. However, it is still unclear how the new advances in genomics should be used most efficiently to address this question. In this study we identify genes that are common to any group of genomes ...
    • Molecular Characterization of Cold Adaptation of Membrane Proteins in the Vibrionaceae Core-Genome 

      Kahlke, Tim; Thorvaldsen, Steinar (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      Cold-adaptation strategies have been studied in multiple psychrophilic organisms, especially for psychrophilic enzymes. Decreased enzyme activity caused by low temperatures as well as a higher viscosity of the aqueous environment require certain adaptations to the metabolic machinery of the cell. In addition to this, low temperature has deleterious effects on the lipid bilayer of bacterial membranes ...
    • The EMEP MSC-W chemical transport model - technical description 

      Simpson, David; Benedictow, Anna; Berge, Halldis; Bergström, Robert; Emberson, Lisa D.; Fagerli, Hilde; Flechard, Chris R.; Hayman, Garry D.; Gauss, Michael; Jonson, Jan Eiof; Jenkin, Michael E.; Nyiri, Agnes; Richter, Cornelia; Semeena, Valiyavetil S.; Tsyro, Svetlana; Tuovinen, Juha Pekka; Valdebenito, Alvaro; Wind, Peter (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      The Meteorological Synthesizing Centre-West (MSC-W) of the European Monitoring and Evaluation Programme (EMEP) has been performing model calculations in support of the Convention on Long Range Transboundary Air Pollution (CLRTAP) for more than 30 years. The EMEP MSC-W chemical transport model is still one of the key tools within European air pollution policy assessments. Traditionally, the model ...
    • A Synthetic Route to Quaternary Pyridinium Salt-Functionalized Silsesquioxanes 

      Kostenko, Nataliya; Gottfriedsen, Jochen; Hilfert, Liane; Edelmann, Frank T (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      A synthetic route to potentially biocidal silsesquioxanes functionalized by quaternary pyridinium functionalities has been developed. N-Alkylation reactions of the precursor compounds 4-(2-(trimethoxysilyl)ethyl)-pyridine (5) and 4-(2-trichloro-silylethyl)pyridine (6) with iodomethane, n-hexylbromide, and n-hexadecylbromide cleanly afforded the corresponding N-alkylpyridinium salts (7–10). The ...
    • A multi-model study of impacts of climate change on surface ozone in Europe 

      Langner, J.; Engardt, M.; Baklanov, A.; Christensen, J. H.; Gauss, Michael; Geels, Camila; Hedegaard, G.B.; Nuterman, R.; Simpson, D.; Soares, J; Sofiev, M; Wind, Peter; Zakey, A. (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      The impact of climate change on surface ozone over Europe was studied using four offline regional chemistry transport models (CTMs) and one online regional integrated climate-chemistry model (CCM), driven by the same global projection of future climate under the SRES A1B scenario. Anthropogenic emissions of ozone precursors from RCP4.5 for year 2000 were used for simulations of both present and ...
    • Lipopolysaccharide O-Antigen Prevents Phagocytosis of Vibrio anguillarum by Rainbow Trout (Oncorhynchus mykiss) Skin Epithelial Cells 

      Lindell, Kristoffer; Fahlgren, Anna; Hjerde, Erik; Willassen, Nils Peder; Fällman, Maria; Milton, Debra L (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      Colonization of host tissues is a first step taken by many pathogens during the initial stages of infection. Despite the impact of bacterial disease on wild and farmed fish, only a few direct studies have characterized bacterial factors required for colonization of fish tissues. In this study, using live-cell and confocal microscopy, rainbow trout skin epithelial cells, the main structural component ...
    • Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida 

      Hansen, Geir Åsmund; Ahmad, Rafi; Hjerde, erik; Fenton, Christopher Graham; Willassen, Nils Peder; Haugen, Peik (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      Spot 42 was discovered in Escherichia coli nearly 40 years ago as an abundant, small and unstable RNA. Its biological role has remained obscure until recently, and is today implicated in having broader roles in the central and secondary metabolism. Spot 42 is encoded by the spf gene. The gene is ubiquitous in the Vibrionaceae family of gamma-proteobacteria. One member of this family, Aliivibrio ...
    • The Methylococcus capsulatus (Bath) secreted protein, MopE*, binds both reduced and oxidized copper. 

      Ve, Thomas; Mathisen, Karina; Helland, Ronny; Karlsen, Odd Andre; Fjellbirkeland, Anne; Røhr, Åsmund Kjendseth; Andersson, K. Kristoffer; Pedersen, Rolf B.; Lillehaug, Johan R.; Jensen, Harald B (Journal article; Tidsskriftartikkel; Peer reviewed, 2012)
      Under copper limiting growth conditions the methanotrophic bacterium Methylococcus capsulatus (Bath) secrets essentially only one protein, MopE*, to the medium. MopE* is a copper-binding protein whose structure has been determined by X-ray crystallography. The structure of MopE* revealed a unique high affinity copper binding site consisting of two histidine imidazoles and one kynurenine, the latter ...