Now showing items 201-220 of 611

    • ThermoSlope: A Software for Determining Thermodynamic Parameters from Single Steady-State Experiments 

      Lund, Bjarte Aarmo; Brandsdal, Bjørn Olav (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-11-26)
      The determination of the temperature dependence of enzyme catalysis has traditionally been a labourious undertaking. We have developed a new approach to the classical Arrhenius parameter estimation by fitting the change in velocity under a gradual change in temperature. The evaluation with a simulated dataset shows that the approach is valid. The approach is demonstrated as a useful tool by ...
    • Anti-Colonization Effect of Au Surfaces with Self-Assembled Molecular Monolayers Functionalized with Antimicrobial Peptides on S. epidermidis 

      Karlsen, Eskil André; Stensen, Wenche; Juskewitz, Eric; Svenson, Johan; Berglin, Mattias; Svendsen, John Sigurd Mjøen (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-10)
      Medical devices with an effective anti-colonization surface are important tools for combatting healthcare-associated infections. Here, we investigated the anti-colonization efficacy of antimicrobial peptides covalently attached to a gold model surface. The gold surface was modified by a self-assembled polyethylene glycol monolayer with an acetylene terminus. The peptides were covalently connected ...
    • Synthesis of 5,7-diarylindoles via Suzuki-Miyaura coupling in water 

      Elumalai, Vijayaragavan; Hansen, Jørn H (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-11-16)
      The synthesis of novel 5,7-diaryl and diheteroaryl indoles has been explored via efficient double Suzuki–Miyaura coupling. The method notably employs a low catalyst loading of Pd(PPh<sub>3</sub>)<sub>4</sub> (1.5 mol%/coupling) and water as the reaction solvent to obtain 5,7-diarylated indoles without using N-protecting groups in up to 91% yield. The approach is also suitable for N-protected and ...
    • Relativistic Four-Component DFT Calculations of Vibrational Frequencies 

      Jakubowska, Katarzyna; Pecul-Kudelska, Magdalena; Ruud, Kenneth (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-11-29)
      We investigate the effect of relativity on harmonic vibrational frequencies. Density functional theory (DFT) calculations using the four-component Dirac–Coulomb Hamiltonian have been performed for 15 hydrides (H<sub>2</sub>X, X = O, S, Se, Te, Po; XH<sub>3</sub>, X = N, P, As, Sb, Bi; and XH<sub>4</sub>, X = C, Si, Ge, Sn, Pb) as well as for HC≡CPbH<sub>3</sub>. The vibrational frequencies have been ...
    • The Dog That Didn't Bark: A New Interpretation of Hypsoporphyrin Spectra and the Question of Hypsocorroles 

      Ghosh, Abhik; Conradie, Jeanet (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-11-11)
      Nearly a half-century after Gouterman classified the UV–vis–NIR spectra of porphyrin derivatives as normal, hyper, or hypso, we propose a heretofore unsuspected “mechanism” underlying hypso spectra. Hypsoporphyrins, which exhibit blueshifted optical spectra relative to normal porphyrins (such as Zn porphyrins), typically involve dn transition metal ions, where n > 6. The spectral blueshifts have ...
    • Synthesis, Spectroscopy, Electrochemistry and DFT of Electron-Rich Ferrocenylsubphthalocyanines 

      Conradie, Jeanet; Swarts, Petrus (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-06-01)
      A series of novel ferrocenylsubphthalocyanine dyads Y-BSubPc(H)<sub>12</sub> with ferrocenylcarboxylic acids Y-H = (FcCH<sub>2</sub>CO<sub>2</sub>-H), (Fc(CH<sub>2</sub>)<sub>3</sub>CO<sub>2</sub>-H) or (FcCO(CH<sub>2</sub>)<sub>2</sub>CO<sub>2</sub>-H) in the axial position were synthesized from the parent Cl-BSubPc(H)<sub>12</sub> via an activated triflate-SubPc intermediate. UV/Vis data revealed ...
    • X-ray absorption spectroscopy of exemplary platinum porphyrin and corrole derivatives: metal- versus ligand-centered oxidation 

      Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-09-30)
      A combination of Pt L<sub>3</sub>-edge X-ray absorption spectroscopy (EXAFS and XANES) and DFT (TPSS) calculations have been performed on powder samples of the archetypal platinum porphyrinoid complexes Pt<sup>II</sup>[TpCF<sub>3</sub>PP], Pt<sup>IV</sup>[TpCF<sub>3</sub>PP]Cl<sub>2</sub>, and Pt<sup>IV</sup>[TpCF<sub>3</sub>PC](Ar)(py), where TpCF<sub>3</sub>PP<sup>2-</sup> = meso-tetrakis(p-tr ...
    • Ligand-Centered Triplet Diradical Supported by a Binuclear Palladium(II) Dipyrrindione 

      Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-04)
      Oligopyrroles form a versatile class of redox-active ligands and electron reservoirs. Although the stabilization of radicals within oligopyrrolic π systems is more common for macrocyclic ligands, bidentate dipyrrindiones are emerging as compact platforms for one-electron redox chemistry in transition-metal complexes. We report the synthesis of a bis(aqua) palladium(II) dipyrrindione complex and its ...
    • Mechanistic Insights into Carbamate Formation from CO2 and Amines: The Role of Guanidine–CO2 Adducts, 

      Mannisto, Jere K.; Pavlovic, Ljiljana; Tiainen, Tony; Nieger, Martin; Sahari, Aleksi; Hopmann, Kathrin Helen; Repo, Timo (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-09-02)
      Capture of CO<sub>2</sub> by amines is an attractive synthetic strategy for the formation of carbamates. Such reactions can be mediated by superbases, such as 1,1,3,3-tetramethylguanidine (TMG), with previous implications that zwitterionic superbase–CO<sub>2</sub> adducts are able to actively transfer the carboxylate group to various substrates. Here we report a detailed investigation of zwitterionic ...
    • Heavy-element–ligand covalence: ligand noninnocence in molybdenum and tungsten Viking-helmet Corroles 

      Ghosh, Abhik (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-07)
      Extensive DFT calculations with several exchange–correlation functionals indicate that molybdenum-dichlorido Viking helmet corroles are noninnocent with significant Mo<sup>IV</sup>-corrole<sup>˙2−</sup> character. The effect is mediated by a Mo(4d)-corrole(π) orbital interaction similar to that postulated for MnCl, FeCl and FeNO corroles. The effect also appears to operate in tungsten-dichlorido ...
    • Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and SHD-1 

      Frøhlich, Christopher; Sørum, Vidar; Huber, Sandra; Samuelsen, Ørjan; Berglund, Fanny; Kristiansson, Erik; Kotsakis, Stathis D.; Marathe, Nachiket; Larsson, DG Joakim; Leiros, Hanna-Kirsti Schrøder (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-05-28)
      Background: MBLs form a large and heterogeneous group of bacterial enzymes conferring resistance to b-lactam antibiotics, including carbapenems. A large environmental reservoir of MBLs has been identified, which can act as a source for transfer into human pathogens. Therefore, structural investigation of environmental and clinically rare MBLs can give new insights into structure–activity relationships ...
    • A Green, Scalable, and Catalyst-Free One-Minute Synthesis of Quinoxalines 

      Elumalai, Vijayaragavan; Hansen, Jørn H (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-10)
      A highly efficient and catalyst-free protocol is reported for the synthesis of quinoxalines via the classical cyclocondensation reaction between aryldiamines and dicarbonyl compounds. Remarkably simple and green reaction conditions employing methanol as solvent afforded medium to excellent yield of quinoxalines after only one-minute reaction time at ambient temperature. The conditions allow at least ...
    • Improved Buchwald–Hartwig Amination by the Use of Lipids and Lipid Impurities 

      Gevorgyan, Ashot; Hopmann, Kathrin Helen; Bayer, Annette (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-25)
      The development of green Buchwald–Hartwig aminations has long been considered challenging, due to the high sensitivity of the reaction to the environment. Here we show that food-grade and waste vegetable oils, triglycerides originating from animals, and natural waxes can serve as excellent green solvents for Buchwald–Hartwig amination. We further demonstrate that amphiphiles and trace ingredients ...
    • Halogen Bonding: An Odd Chemistry? 

      Turunen, Lotta; Hansen, Jørn H; Erdélyi, Máté (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-03)
      Halogen bonding is a flourishing field of research, but has for long been little recognized. The same goes for its scientific hero, Odd Hassel, who laid the foundations for all current developments. The crystallographic observation of halogen−oxygen interatomic distances shorter than the sum of the van der Waals radii of the involved atoms, and the interpretation of this phenomenon as a charge-transfer ...
    • Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis 

      Ghosh, Abhik; Conradie, Jeanet; Strange, Richard W; Antonyuk, Svetlana V; Eady, Robert R; Hasnain, Samar (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-10-20)
      The design and synthesis of copper complexes that can reduce nitrite to NO has attracted considerable interest. They have been guided by the structural information on the catalytic Cu centre of the widespread enzymes Cu nitrite reductases but the chemically novel side-on binding of NO observed in all crystallographic studies of these enzymes has been questioned in terms of its functional relevance. ...
    • Gruppelærerdagen – trygghet og kvalitet fra første undervisningstime 

      Huru, Hilja Lisa; Beerepoot, Maarten (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-24)
      En stor del av undervisningen i realfagene ved norske universiteter blir utført av stipendiater eller studenter fra tidligere kull. Fokus på opplæring av denne gruppen undervisere kan bidra til en positiv effekt på undervisningskvalitet og studentenes læring. Det varierer imidlertid fra institusjon til institusjon om det finnes en slik type opplæring og omfang og kvalitet på denne opplæringen kan ...
    • Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model 

      Dundas, Karen Oda Hjorth Minde; Beerepoot, Maarten T. P.; Ringholm, Magnus; Reine, Simen Sommerfelt; Bast, Radovan; List, Nanna Holmgaard; Kongsted, Jacob; Ruud, Kenneth; Olsen, Jógvan Magnus Haugaard (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-19)
      We present a fully analytic approach to calculate infrared (IR) and Raman spectra of molecules embedded in complex molecular environments modeled using the fragment-based polarizable embedding (PE) model. We provide the theory for the calculation of analytic second-order geometric derivatives of molecular energies and first-order geometric derivatives of electric dipole moments and dipole–dipole ...
    • A Green, Scalable, One-Minute Synthesis of Benzimidazoles 

      Elumalai, Vijayaragavan; Hansen, Jørn H (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-01-24)
      Herein is reported a substantially improved synthesis of 2-substituted benzimidazoles by condensation of 1,2-diaminoarenes and aldehydes using methanol as the reaction medium. The developed method afforded moderate to excellent yields (33-96%) at ambient temperature, displays high functional group tolerance, is conducted open to air, and requires only one-minute reaction time under catalyst- ...
    • Ni(I)–Alkyl Complexes Bearing Phenanthroline Ligands: Experimental Evidence for CO2 Insertion at Ni(I) Centers 

      Somerville, Rosie J.; Odena, Carlota; Obst, Marc; Hazari, Nilay; Hopmann, Kathrin Helen; Martin, Ruben (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-06-10)
      Although the catalytic carboxylation of unactivated alkyl electrophiles has reached remarkable levels of sophistication, the intermediacy of (phenanthroline)Ni(I)–alkyl species—complexes proposed in numerous Ni-catalyzed reductive cross-coupling reactions—has been subject to speculation. Herein we report the synthesis of such elusive (phenanthroline)Ni(I) species and their reactivity with CO<sub>2</sub>, ...
    • Structural and functional variation of chitin-binding domains of a lytic polysaccharide monooxygenase from Cellvibrio japonicus 

      Madland, Eva; Forsberg, Zarah; Wang, Yong; Lindorff-Larsen, Kresten; Niebisch, Axel; Modregger, Jan; Eijsink, Vincent; Aachmann, Finn Lillelund; Courtade, Gaston (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-17)
      Among the extensive repertoire of carbohydrate-active enzymes, lytic polysaccharide monooxygenases (LPMOs) have a key role in recalcitrant biomass degradation. LPMOs are copper-dependent enzymes that catalyze oxidative cleavage of glycosidic bonds in polysaccharides such as cellulose and chitin. Several LPMOs contain carbohydrate-binding modules (CBMs) that are known to promote LPMO efficiency. ...